PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC308_p4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HB-other
Protein Properties Length: 353aa    MW: 38580.4 Da    PI: 8.5854
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC308_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox185.1e-061474755
               --HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
   Homeobox  7 ftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
               f+  +++e+e++ ++  ++ p +++ e LA+k            ++ +q+ +WFqNrR+  
  RrC308_p4 14 FNLAEVTEMEAVLQQhdTSMPGRHTLEALAEKFsgtverkgktVVQFKQIWNWFQNRRYAL 74
               6667788888888876689999**********999999999999999***********965 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.89E-10476IPR009057Homeodomain-like
PROSITE profilePS500718.843577IPR001356Homeobox domain
SMARTSM003890.002781IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.0E-71379IPR009057Homeodomain-like
CDDcd000864.30E-41375No hitNo description
PfamPF167191.1E-40139267IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MGRPPSNGSP AFRFNLAEVT EMEAVLQQHD TSMPGRHTLE ALAEKFSGTV ERKGKTVVQF  60
KQIWNWFQNR RYALRAKGNK APGKLNVSSM PRASLDPTNQ MRNVFPPSAG PKPTHMTGPI  120
TTPSPSVPGV MRSGSDNSYL EFEAKSARDG AWYDVQAFLA HRNLEIGDPE VQVRFAGFEV  180
EEDEWINVKR NVRQRSLPCE ASECVAVLAG DLVLCFQEGK DQALYFDATV LDAQRRRHDV  240
RGCRCRFLVR YGHDQSEQEI VPLRKICRRP ETDYRLQQLH SASANDFANS KPAPDAAAKA  300
PLPQSSVSAP LPQSSVSAPS VVPPDVKDPS LSGAATSAQP SSNAAATVPA GSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A2e-451402714134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B2e-451402714134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A2e-451402714134SHH1 SAWADEE
4iur_B2e-451402714134SHH1 SAWADEE
4iut_A2e-451402714134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B2e-451402714134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A2e-451402714134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B2e-451402714134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A2e-451402714134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B2e-451402714134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0930420.0AY093042.1 Arabidopsis thaliana unknown protein (At3g18380) mRNA, complete cds.
GenBankBT0034280.0BT003428.1 Arabidopsis thaliana unknown protein (At3g18380) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009112763.10.0PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2-like isoform X1
SwissprotQ8RWJ70.0SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A078G0K40.0A0A078G0K4_BRANA; BnaA01g26780D protein
STRINGBra037587.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73992437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.31e-178sequence-specific DNA binding transcription factors;sequence-specific DNA binding